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I definitely have secondary hypogonadism, so maybe a regimen of Clomid can assist? or cypionate injections a couple times week with HGC? Thoughts?
These are both viable options. If it works, Clomid is cheaper and easier. So in your shoes I'd ask the doctor to try it first. Go by Dr. Crisler's advice of "low and slow", meaning start with a small dose, wait a while each time before increasing, and increase by small amounts. A typical starting point is 12.5 mg every other day (eod). Wait some weeks, see how you're feeling, and measure total testosterone, SHBG and estradiol with the sensitive test. If eventually you reach 25 mg of Clomid every day and your numbers aren't reasonable, say total testosterone of 600-800 ng/dl, then you might start thinking about injections and hCG.
If you reach good testosterone and estradiol numbers but still have some symptoms then don't panic. It can take many months for all the benefits of restored hormone levels to kick in.